A systematic evaluation of single cell RNA-seq analysis pipelines | Nature Communications
GitHub - theislab/single-cell-tutorial: Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq - ScienceDirect
GEOexplorer – a webserver for gene expression analysis and visualisation | RNA-Seq Blog
Documentation - Gene Expression Nebulas
mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data | Nature Communications
Cells | Free Full-Text | Detecting Interactive Gene Groups for Single-Cell RNA-Seq Data Based on Co-Expression Network Analysis and Subgraph Learning
BxGenomics - RNA-Seq data analysis and mining
A hitchhiker's guide to single-cell transcriptomics and data analysis pipelines - ScienceDirect
Applied Sciences | Free Full-Text | Analyzing RNA-Seq Gene Expression Data Using Deep Learning Approaches for Cancer Classification
Sensors | Free Full-Text | Machine Learning Analysis of RNA-seq Data for Diagnostic and Prognostic Prediction of Colon Cancer
Simplified schematic workflow of the study. Bulk and single-cell RNA... | Download Scientific Diagram
Gene Expression Repositories Explained
GEO2RNAseq: An easy-to-use R pipeline for complete pre-processing of RNA-seq data | bioRxiv
All of gene expression (AOE): An integrated index for public gene expression databases | PLOS ONE
Uwe Ohler's Lab at MDC
Analysis workflow of publicly available RNA-sequencing datasets - ScienceDirect
Cell-level metadata are indispensable for documenting single-cell RNA sequencing datasets | RNA-Seq Blog
Visualizing RNA-seq Data—Pro-Tips From an NCI Bioinformatics Engineer | CBIIT
Atlas of RNA sequencing profiles for normal human tissues | Scientific Data
Retrospective analysis performed on public repository single‐cell RNA... | Download Scientific Diagram
All of gene expression (AOE): An integrated index for public gene expression databases | PLOS ONE
A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals | BMC Genomics | Full Text
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data | Scientific Reports
Quantitative and Qualitative RNA-Seq-Based Evaluation of Epstein-Barr Virus Transcription in Type I Latency Burkitt's Lymphoma Cells | Journal of Virology
![Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2017/2888/1/fig-1-full.png "Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization [PeerJ]")
Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization [PeerJ]
